feat: rigorous biophysics reconstruction for Paper 2
Closes #118, #119, #120, #121
This commit is contained in:
@@ -0,0 +1,194 @@
|
||||
This is pdfTeX, Version 3.141592653-2.6-1.40.25 (TeX Live 2023/Debian) (preloaded format=pdflatex 2026.5.30) 1 JUN 2026 23:08
|
||||
entering extended mode
|
||||
restricted \write18 enabled.
|
||||
%&-line parsing enabled.
|
||||
**paper_2_neuroscience.tex
|
||||
(./paper_2_neuroscience.tex
|
||||
LaTeX2e <2023-11-01> patch level 1
|
||||
L3 programming layer <2024-01-22>
|
||||
(/usr/share/texlive/texmf-dist/tex/latex/base/article.cls
|
||||
Document Class: article 2023/05/17 v1.4n Standard LaTeX document class
|
||||
(/usr/share/texlive/texmf-dist/tex/latex/base/size11.clo
|
||||
File: size11.clo 2023/05/17 v1.4n Standard LaTeX file (size option)
|
||||
)
|
||||
\c@part=\count187
|
||||
\c@section=\count188
|
||||
\c@subsection=\count189
|
||||
\c@subsubsection=\count190
|
||||
\c@paragraph=\count191
|
||||
\c@subparagraph=\count192
|
||||
\c@figure=\count193
|
||||
\c@table=\count194
|
||||
\abovecaptionskip=\skip48
|
||||
\belowcaptionskip=\skip49
|
||||
\bibindent=\dimen140
|
||||
)
|
||||
(/usr/share/texlive/texmf-dist/tex/latex/base/inputenc.sty
|
||||
Package: inputenc 2021/02/14 v1.3d Input encoding file
|
||||
\inpenc@prehook=\toks17
|
||||
\inpenc@posthook=\toks18
|
||||
)
|
||||
(/usr/share/texlive/texmf-dist/tex/latex/amsmath/amsmath.sty
|
||||
Package: amsmath 2023/05/13 v2.17o AMS math features
|
||||
\@mathmargin=\skip50
|
||||
|
||||
For additional information on amsmath, use the `?' option.
|
||||
(/usr/share/texlive/texmf-dist/tex/latex/amsmath/amstext.sty
|
||||
Package: amstext 2021/08/26 v2.01 AMS text
|
||||
|
||||
(/usr/share/texlive/texmf-dist/tex/latex/amsmath/amsgen.sty
|
||||
File: amsgen.sty 1999/11/30 v2.0 generic functions
|
||||
\@emptytoks=\toks19
|
||||
\ex@=\dimen141
|
||||
))
|
||||
(/usr/share/texlive/texmf-dist/tex/latex/amsmath/amsbsy.sty
|
||||
Package: amsbsy 1999/11/29 v1.2d Bold Symbols
|
||||
\pmbraise@=\dimen142
|
||||
)
|
||||
(/usr/share/texlive/texmf-dist/tex/latex/amsmath/amsopn.sty
|
||||
Package: amsopn 2022/04/08 v2.04 operator names
|
||||
)
|
||||
\inf@bad=\count195
|
||||
LaTeX Info: Redefining \frac on input line 234.
|
||||
\uproot@=\count196
|
||||
\leftroot@=\count197
|
||||
LaTeX Info: Redefining \overline on input line 399.
|
||||
LaTeX Info: Redefining \colon on input line 410.
|
||||
\classnum@=\count198
|
||||
\DOTSCASE@=\count199
|
||||
LaTeX Info: Redefining \ldots on input line 496.
|
||||
LaTeX Info: Redefining \dots on input line 499.
|
||||
LaTeX Info: Redefining \cdots on input line 620.
|
||||
\Mathstrutbox@=\box51
|
||||
\strutbox@=\box52
|
||||
LaTeX Info: Redefining \big on input line 722.
|
||||
LaTeX Info: Redefining \Big on input line 723.
|
||||
LaTeX Info: Redefining \bigg on input line 724.
|
||||
LaTeX Info: Redefining \Bigg on input line 725.
|
||||
\big@size=\dimen143
|
||||
LaTeX Font Info: Redeclaring font encoding OML on input line 743.
|
||||
LaTeX Font Info: Redeclaring font encoding OMS on input line 744.
|
||||
\macc@depth=\count266
|
||||
LaTeX Info: Redefining \bmod on input line 905.
|
||||
LaTeX Info: Redefining \pmod on input line 910.
|
||||
LaTeX Info: Redefining \smash on input line 940.
|
||||
LaTeX Info: Redefining \relbar on input line 970.
|
||||
LaTeX Info: Redefining \Relbar on input line 971.
|
||||
\c@MaxMatrixCols=\count267
|
||||
\dotsspace@=\muskip16
|
||||
\c@parentequation=\count268
|
||||
\dspbrk@lvl=\count269
|
||||
\tag@help=\toks20
|
||||
\row@=\count270
|
||||
\column@=\count271
|
||||
\maxfields@=\count272
|
||||
\andhelp@=\toks21
|
||||
\eqnshift@=\dimen144
|
||||
\alignsep@=\dimen145
|
||||
\tagshift@=\dimen146
|
||||
\tagwidth@=\dimen147
|
||||
\totwidth@=\dimen148
|
||||
\lineht@=\dimen149
|
||||
\@envbody=\toks22
|
||||
\multlinegap=\skip51
|
||||
\multlinetaggap=\skip52
|
||||
\mathdisplay@stack=\toks23
|
||||
LaTeX Info: Redefining \[ on input line 2953.
|
||||
LaTeX Info: Redefining \] on input line 2954.
|
||||
)
|
||||
(/usr/share/texlive/texmf-dist/tex/latex/amsfonts/amssymb.sty
|
||||
Package: amssymb 2013/01/14 v3.01 AMS font symbols
|
||||
|
||||
(/usr/share/texlive/texmf-dist/tex/latex/amsfonts/amsfonts.sty
|
||||
Package: amsfonts 2013/01/14 v3.01 Basic AMSFonts support
|
||||
\symAMSa=\mathgroup4
|
||||
\symAMSb=\mathgroup5
|
||||
LaTeX Font Info: Redeclaring math symbol \hbar on input line 98.
|
||||
LaTeX Font Info: Overwriting math alphabet `\mathfrak' in version `bold'
|
||||
(Font) U/euf/m/n --> U/euf/b/n on input line 106.
|
||||
))
|
||||
(/usr/share/texlive/texmf-dist/tex/latex/amscls/amsthm.sty
|
||||
Package: amsthm 2020/05/29 v2.20.6
|
||||
\thm@style=\toks24
|
||||
\thm@bodyfont=\toks25
|
||||
\thm@headfont=\toks26
|
||||
\thm@notefont=\toks27
|
||||
\thm@headpunct=\toks28
|
||||
\thm@preskip=\skip53
|
||||
\thm@postskip=\skip54
|
||||
\thm@headsep=\skip55
|
||||
\dth@everypar=\toks29
|
||||
)
|
||||
(/usr/share/texlive/texmf-dist/tex/latex/cite/cite.sty
|
||||
LaTeX Info: Redefining \cite on input line 302.
|
||||
LaTeX Info: Redefining \nocite on input line 332.
|
||||
Package: cite 2015/02/27 v 5.5
|
||||
)
|
||||
(/usr/share/texlive/texmf-dist/tex/latex/l3backend/l3backend-pdftex.def
|
||||
File: l3backend-pdftex.def 2024-01-04 L3 backend support: PDF output (pdfTeX)
|
||||
\l__color_backend_stack_int=\count273
|
||||
\l__pdf_internal_box=\box53
|
||||
)
|
||||
(./paper_2_neuroscience.aux)
|
||||
\openout1 = `paper_2_neuroscience.aux'.
|
||||
|
||||
LaTeX Font Info: Checking defaults for OML/cmm/m/it on input line 10.
|
||||
LaTeX Font Info: ... okay on input line 10.
|
||||
LaTeX Font Info: Checking defaults for OMS/cmsy/m/n on input line 10.
|
||||
LaTeX Font Info: ... okay on input line 10.
|
||||
LaTeX Font Info: Checking defaults for OT1/cmr/m/n on input line 10.
|
||||
LaTeX Font Info: ... okay on input line 10.
|
||||
LaTeX Font Info: Checking defaults for T1/cmr/m/n on input line 10.
|
||||
LaTeX Font Info: ... okay on input line 10.
|
||||
LaTeX Font Info: Checking defaults for TS1/cmr/m/n on input line 10.
|
||||
LaTeX Font Info: ... okay on input line 10.
|
||||
LaTeX Font Info: Checking defaults for OMX/cmex/m/n on input line 10.
|
||||
LaTeX Font Info: ... okay on input line 10.
|
||||
LaTeX Font Info: Checking defaults for U/cmr/m/n on input line 10.
|
||||
LaTeX Font Info: ... okay on input line 10.
|
||||
LaTeX Font Info: Trying to load font information for U+msa on input line 11.
|
||||
|
||||
|
||||
(/usr/share/texlive/texmf-dist/tex/latex/amsfonts/umsa.fd
|
||||
File: umsa.fd 2013/01/14 v3.01 AMS symbols A
|
||||
)
|
||||
LaTeX Font Info: Trying to load font information for U+msb on input line 11.
|
||||
|
||||
|
||||
(/usr/share/texlive/texmf-dist/tex/latex/amsfonts/umsb.fd
|
||||
File: umsb.fd 2013/01/14 v3.01 AMS symbols B
|
||||
) [1
|
||||
|
||||
{/var/lib/texmf/fonts/map/pdftex/updmap/pdftex.map}] [2] (./paper_2_neuroscienc
|
||||
e.aux)
|
||||
***********
|
||||
LaTeX2e <2023-11-01> patch level 1
|
||||
L3 programming layer <2024-01-22>
|
||||
***********
|
||||
)
|
||||
Here is how much of TeX's memory you used:
|
||||
1959 strings out of 476106
|
||||
27912 string characters out of 5793933
|
||||
1931975 words of memory out of 5000000
|
||||
23982 multiletter control sequences out of 15000+600000
|
||||
571846 words of font info for 88 fonts, out of 8000000 for 9000
|
||||
59 hyphenation exceptions out of 8191
|
||||
56i,9n,65p,770b,218s stack positions out of 10000i,1000n,20000p,200000b,200000s
|
||||
</usr/share/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmbx10.pfb></us
|
||||
r/share/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmbx12.pfb></usr/shar
|
||||
e/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmmi10.pfb></usr/share/texl
|
||||
ive/texmf-dist/fonts/type1/public/amsfonts/cm/cmmi8.pfb></usr/share/texlive/tex
|
||||
mf-dist/fonts/type1/public/amsfonts/cm/cmr10.pfb></usr/share/texlive/texmf-dist
|
||||
/fonts/type1/public/amsfonts/cm/cmr12.pfb></usr/share/texlive/texmf-dist/fonts/
|
||||
type1/public/amsfonts/cm/cmr17.pfb></usr/share/texlive/texmf-dist/fonts/type1/p
|
||||
ublic/amsfonts/cm/cmr8.pfb></usr/share/texlive/texmf-dist/fonts/type1/public/am
|
||||
sfonts/cm/cmsy10.pfb></usr/share/texlive/texmf-dist/fonts/type1/public/amsfonts
|
||||
/cm/cmsy8.pfb></usr/share/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmt
|
||||
i10.pfb>
|
||||
Output written on paper_2_neuroscience.pdf (2 pages, 137657 bytes).
|
||||
PDF statistics:
|
||||
66 PDF objects out of 1000 (max. 8388607)
|
||||
39 compressed objects within 1 object stream
|
||||
0 named destinations out of 1000 (max. 500000)
|
||||
1 words of extra memory for PDF output out of 10000 (max. 10000000)
|
||||
|
||||
Reference in New Issue
Block a user