Refactor: Upgraded repo to Sovereign Canon Monograph structure and organized master keys

papers/project_paper_3_darwinism/README.md

@@ -4,8 +4,8 @@
 This paper applies Zurek's framework of Quantum Darwinism to biological scales, analyzing the spin-boson coupling of macromolecules at $310$K. We derive the analytic decoherence function over an Ohmic spectral density, demonstrating that Tegmark's ultra-fast $\mathcal{O}(10^{-13}\text{s})$ decoherence timescale ensures an extreme redundancy parameter ($R_\delta \gg 1$). The paper proves that warm, wet biological environments act as macroscopic amplification channels, generating biological classicality through massive quantum information proliferation rather than attempting to evade decoherence.
 
 ## Resources
-- [LaTeX Source (paper_3_darwinism.tex)](paper_3_darwinism.tex)
-- [Compiled PDF (paper_3_darwinism.pdf)](paper_3_darwinism.pdf)
+- [LaTeX Source (master_key/paper_3_darwinism.tex)](master_key/paper_3_darwinism.tex)
+- [Compiled PDF (master_key/paper_3_darwinism.pdf)](master_key/paper_3_darwinism.pdf)
 
 ### Foundational Source Material (Bibliography)
 - [Zurek2009 (PDF)](../references/Zurek2009.pdf)
@@ -22,10 +22,11 @@ This document is part of the **Intellecton Sovereign Canon**, a six-paper mathem
 2. 4D spacetime is not a physical container; it is an emergent "Virtual Machine" or biological GUI rendered by the interaction of these agents.
 3. Quantum mechanics and thermodynamic limits (like Landauer's limit and the Bekenstein-Hawking bound) are treated as structural bottlenecks of the perceptual interface, not objective bulk physics.
 
-**The Complete Canon:**
-- [Paper 1: Holographic Observer-Conditioned Relativity](../project_paper_1_relativity/README.md)
-- [Paper 2: The Cortical Markov Blanket](../project_paper_2_neuroscience/README.md)
-- [Paper 3: Biophysical Witness Dynamics](../project_paper_3_darwinism/README.md)
-- [Paper 4: Cost-Penalized Interface Games](../project_paper_4_fbt/README.md)
-- [Paper 5: Quasi-Delay-Insensitive Architecture](../project_paper_5_turing/README.md)
-- [Paper 6: Holographic Ontology of Conscious Agents](../project_paper_6_holographic/README.md)
+
+**The 6 Core Volumes (The Monograph):**
+- [Volume 1: The Causal Set Observer](../project_paper_1_relativity/README.md)
+- [Volume 2: The Markovian Boundary](../project_paper_2_neuroscience/README.md)
+- [Volume 3: Quantum Darwinism](../project_paper_3_darwinism/README.md)
+- [Volume 4: Evolutionary Game Theory](../project_paper_4_fbt/README.md)
+- [Volume 5: Continuous Computation](../project_paper_5_turing/README.md)
+- [Volume 6: Holographic Entanglement](../project_paper_6_holographic/README.md)